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Publications (Conferences)

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   * Corresponding Author(s)

    Names in bold letters: BIIL members

 

Conferences

  1. Hansol Lee, Songyeon Lee, Ingoo Lee, Hojung Nam*, "AMP BERT: Prediction of antimicrobial peptide function based on a BERT model", BIOINFO 2023, Yeosu, Korea, Nov 13-15, 2023 (poster)

  2. Hyunho Kim, Hojung Nam*, "BayeshERG : A Robust, Reliable, and Interpretable Deep Learning Model for Predicting hERG Channel Blockers", BIOINFO 2023, Yeosu, Korea, Nov 13-15, 2023 (poster)

  3. Songyeon Lee, Hojung Nam*, "Synthetic lethality prediction via attentive knowledge graph neural network in the divergent human cancer cell lines", BIOINFO 2023, Yeosu, Korea, Nov 13-15, 2023 (poster)

  4. Bongsung Bae, Haelee Bae, Hojung Nam*, "LOGICS: Learning optimal generative distribution for designing de novo chemical structures", BIOINFO 2023, Yeosu, Korea, Nov 13-15, 2023 (poster)

  5. Eunyoung Kim, Hojung Nam*, “DeSIDE-DDI: Interpretable prediction of drug-drug interactions using drug-induced gene expressions”, ISMB 2022, Madison, Wisconsin, USA, July 10-14, 2022 (poster)

  6. Bongsung Bae, Hojung Nam*, “LOGICS: a framework for Learning Optimal Generative distribution Iteratively for the focused Chemical Structures”, ISMB 2022, Madison, Wisconsin, USA, July 10-14, 2022 (poster)

  7. Ingoo Lee, Hojung Nam*, “Sequence-based prediction of protein binding regions and drug–target interactions”, RECOMB 2022, La Jolla, California, USA, May 22-25, 2022 (poster)

  8. Hyunho Kim, Hojung Nam*, “BayeshERG: a robust, reliable and interpretable deep learning model for predicting hERG channel blockers”, RECOMB 2022, La Jolla, California, USA, May 22-25, 2022 (poster)

  9. Hyunho Kim, Hojung Nam*, “hERG-Att: Self-Attention-Based Deep Neural Network for Predicting hERG Blockers”, APBC 2020, Seoul, Korea, Aug 18-20, 2020

  10. Hyunho Kim, Hojung Nam*, “hERG-Att: Self-Attention-Based Deep Neural Network for Predicting hERG Blockers”, APBC 2020, London, UK, Oct 28-29, 2019 (poster)

  11. IlJung Jin, Hojung Nam*, “Genome-wide transcriptome analysis of osteoarthritis with protein-protein interaction network”, ISMB 2018, Chicago, Illinois, USA, July 6-10, 2018 (poster)

  12. Ingoo Lee, Jongsoo Keum, Hojung Nam*, “Identification of drug-target interaction via deep learning approach”, ISMB 2018, Chicago, Illinois, USA, July 6-10, 2018 (poster)

  13. Heeyeon Choi, Hojung Nam*,"Identification of tissue-specific aging-related epigenetic marker using age prediction model", RECOMB 2018, Paris, France, April 19~24, 2018 (poster)

  14. Eunyoung Kim, A-sol Choi, Hojung Nam*, "Drug repositioning for natural products using machine learning approaches", RECOMB 2018, Paris, France, April 19~24, 2018 (poster)

  15. Soobok Joe, Hojung Nam*, "Prediction of stem cell pluripotency using parallel single-cell transcriptome and methylome sequencing data", ISMB/ECCB 2017, Prague Congress Center, Czech Republic, July 21~25, 2017 (poster)

  16. Eunyoung Kim, Hojung Nam*, "Prediction of drug-drug interactions using molecular structure information and link prediction approaches", ISMB/ECCB 2017, Prague Congress Center, Czech Republic, July 21~25, 2017 (poster)

  17. Ingoo Lee, Hojung Nam* , "Identification of drug-target interactions using weighted interactome network", RECOMB 2017, Hong Kong, China, May 3~7, 2017 (poster)

  18. Jongsoo Keum, Hojung Nam*, "Prediction of drug-target interaction model using deep neural networks approach", RECOMB 2017, HongKong, May, 3~7, 2017 (poster)

  19. Soobok Joe, Hojung Nam*, "Prediction of Stem Cell Pluripotency using Transcriptome and Methylome Sequencing Data", The 13th KOGO Winter Symposium 2017, Hongcheon, Korea, Feb 8~10, 2017 (poster)

  20. Jongsoo Keum, Hojung Nam*, "SELF-BLM: Prediction of drug-target interactions via self-training SVM", The 13th KOGO Winter Symposium 2017, Hongcheon, Korea, Feb 8~10, 2017 (poster)

  21. Eunyoung Kim, Hojung Nam*, "Prediction models for drug-induced liver injury using substructure information", The 13th KOGO Winter Symposium 2017, Hongcheon, Korea, Feb 8~10, 2017 (poster)

  22. Soobok Joe, Hojung Nam*, "Identification of epigenetic control markers for predicting stem cell pluripotency", KSMCB 2016, Hongcheon, Korea, Dec 14~16, 2016 (poster)

  23. Jongsoo Keum, Hojung Nam*, "Prediction of compound-protein interactions using deep neural networks approach" BIOINFO 2016, Incheon, Korea, Aug, 17~19, 2016 (poster)

  24. Eunyoung Kim, Hojung Nam*, "Developing prediction model for drug-induced liver injury by using substructure information" BIOINFO 2016, Incheon, Korea, Aug, 17~19, 2016 (poster)

  25. Jusung Lee, Hojung Nam*, ''Mutation in TET genes induce microsatellite instability by epigenetic silencing of MLH1.", ISMB 2016, Orlando, Florida, USA, July 8~12, 20 (poster)

  26. Jongsoo Keum, Hojung Nam*, ''Prediction of compound-target interactions by using deep-learning networks", ISMB 2016, Orlando, Florida, USA, July 8~12, 20 (poster)

  27. Geunho Lee, Hyun Beom Lee, Byung Hwa Jung*, Hojung Nam*, "MVP: Duplicate Records and Missing Values Preprocessor of Mass spectrometry Data", ISMB 2016, Orlando, Florida, USA, July 8~12, 2016 (poster)

  28. A-sol Choi, Hojung Nam*, "Statistical analysis of cancer mutation enrichments in chromosomes", The 12th KOGO Winter Symposium 2016, Hongcheon, Korea, Feb 1~3, 2016 (poster)

  29. Geunho Lee, Hojung Nam*, "Breast Cancer Subtype Classification using Deep Learning Approach", The 12th KOGO Winter Symposium 2016, Hongcheon, Korea, Feb 1~3, 2016 (poster)

  30. Eunyoung Kim, Sangwoo Kim, Suhyun Ha, Hojung Nam*, "Developing compound toxicity classification models using physicochemical properties and structure information", San Francisco Bay Area, United States, Jan 11-13, 2016 (poster)

  31. Eunyoung Kim, Sangwoo Kim, Suhyun Ha, Hojung Nam*, "Toxicity Predictions using Compound Descriptions", the ACM 9th International Workshop on Data and Text Mining in Bioinformatics, Melbourne, Australia, Oct. 23, 2015 (poster)

  32. Jongmin Lee, Hojung Nam*, "Comparing similarity measures for drug-target interactions prediction model", BIOINFO 2015, Seoul, Korea, Oct, 21~23, 2015 (poster)

  33. Hojung Nam, Asian Regional Conference on Systems Biology/TriSys Workshop, 8-9 September 2015, Bangi, Selangor, Malaysia, Invited Talk.

  34. Seunghwan Jung, Soobok Joe, Hojung Nam*, "Analysis of Functional Impacts on Massive Cancer Mutation Data", The 3rd Annual Translational Bioinformatics Conference (TBC 2013) / ISCB-Asia 2013, JW Marriott, Seoul, Korea,  Oct. 2nd ~ 4th, 2013 (poster)

  35. Hojung Nam, Steve Federowicz, Bernhard Ø. Palsson, and Byung-Kwan Cho, "Oxygen and Nitrate-dependent Regulons of Broad-acting Transcription Factors in Escherichia coli K-12 MG1655", American Society for Microbiology 2010, San Diego, May 23-27, 2010 (poster)

  36. Hojung Nam, KiYoung Lee, Doheon Lee, "Identification of Temporal Association Rules from Time-series Microarray Data Set", ACM Second International Workshop on Data and Text Mining in Bioinformatics in conjunction with CIKM, Napa Valley Marriott Hotel, Napa Valley, California, October 26-30, 2008, pp. 21~27

  37. Hojung Nam, Doheon Lee, "Analyzing active metabolic reactions in perturbations by integrating regulation information", The International Symposium on Optimization and Systems Biology, Beijing (China) August 8-10, , 2007, ORSC & APORC, pp. 143-150

  38. Ho Jung Nam, Hyojin Kang, Sejun Lee, Doheon Lee, "Finding co-effects between genes and metabolites by integrating genetic regulatory network and metabolic pathway", The 3rd International E.coli Alliance Conference on Systems Biology (IECA'2006), Oct.30-Nov.3, International Convention Center Jeju, Jeju, Korea, 2006 (poster)

  39. Ho Jung Nam, Hyojin Kang, Sejun Lee, Doheon Lee, "Finding perturbation corresponding global regulation path by integrating genetic regulatory network and metabolic pathway", The 7th International Conference on Systems Biology (ICSB'2006), Pacifico Yokohama, Yokohama, Japan, October, 2006 (poster)

  40. Ho Jung Nam, Doheon Lee, "Finding temporal association rules from time-series microarray data", The 6th International Symposium on Advanced Intelligent Systems (ISIS'2005), Yousu University, Yousu, Korea, September 2005

  41. Ho Jung Nam, Doheon Lee, "Finding association between genes from microarray sequential pattern analysis", The 2005 International Joint Conference of InCoB, AASBi and KSBI, BEXCO, Busan Korea, September 22-24, 2005

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